The effects are strongest while you are listening to the tones because your brainwaves are synchronized and tuned into the frequency range you desire at that time.  After you've stopped listening the effects can still linger for a while afterwards.  The timescale will vary from person to person and be affected by what you do after you've stopped listening.
Brainwave entrainment is a colloquialism for such 'neural entrainment', which is a term used to denote the way in which the aggregate frequency of oscillations produced by the synchronous electrical activity in ensembles of cortical neurons can adjust to synchronize with the periodic vibration of an external stimuli, such as a sustained acoustic frequency perceived as pitch, a regularly repeating pattern of intermittent sounds, perceived as rhythm, or of a regularly rhythmically intermittent flashing light.
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I am fortunate to be working with Deepak Chopra, M.D., and Dr. Rudy Tanzi, co-authors of the bestselling book Super Brain, on a technology called Brain Wave Entrainment. Deepak is very well known, but Rudy is an amazingly interesting person as well. He is the Kennedy Professor of Neurology at Harvard Medical School and Vice-Chair of Neurology at Mass General Hospital. Rudy co-discovered three of the four original Alzheimer's genes and today runs the Alzheimer's Genome Project. He also plays the keyboards, including, at times, for Aerosmith. He is kind of a real life "Buckaroo Banzai."
Theta brainwaves in the frequency range of 6 to 9 hertz are known as thalpha waves because of their proximity to alpha waves. They are seen during states of high suggestibility, during hypnosis, and during paranormal experience and are also connected to an increase in human growth hormone (HGH) levels and higher blood flow to the brain. Theta brainwaves sit between the realms of the subconscious and conscious mind, making them an especially useful brainwave state for developing creative thinking, working through emotional problems, and integrating subconscious and conscious experience. 
Jump up ^ Trost W. and Vuilleumier P., Rhythmic entrainment as a mechanism for emotion induction by music: a neurophysiological perspective. In The Emotional Power of Music: Multidisciplinary Perspectives on Musical Arousal, Expression, and Social Control, Cochrane T., Fantini B., and Scherer K. R., (Eds.), Oxford, UK: Oxford University Press; 2013, pp213–225.

5) Your cerebral blood flow is being increased - CBF is associated with many forms of mental disorders, including anxiety, depression, attentional problems, behavior disorders and impaired cognitive function. CBF tends to lower as we age often causing cognitive decline. People experiencing depressed mood usually have lower levels of CBF in the left frontal and prefrontal lobes.
Heart rate variability: A new study suggests that among those with low HRV (heart-rate variability), brainwave entrainment can increase HRV. Researchers studied individuals ages 20 to 70 and administered alpha brain stimulation. The alpha wave stimulation resulted in greater heart-rate variability. Since a low HRV is associated with early mortality and poor psychological and physical health, efforts made to increase it should be regarded as beneficial.
Brainwave entrainment also happens with the use of pulsating light, and visual and auditory stimuli are sometimes combined for additional effect and visual stimuli is used alone. Using brainwave entrainment techniques is safe for almost everyone, the exception being pregnant women and people who have seizure disorders who should check with their physician before using these methods.
Brainwave Entrainment is the process of synchronizing the brain to specific frequencies and patterns embedded in audio tracks. These frequencies correlate to specific emotions, feelings, and even energy levels. Using nothing more than sound, Brainwave Entrainment can enhance creativity, change moods, and even alter behavior like sleep and energy levels.

So discovering the field of Brainwave Entrainment is very exciting and promising. However intriguing, there are a few things that make me a bit sceptical towards it. F.i. I’m not too keen on having to rely on any external stimuli, as (regular) meditation is one of the very few things where you are absolutely independent from anything external to make a change within, which to me makes it so special.
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So my question is: Why? When I read it, I had a bit of a fear of brain aneurysms. Therefore, 1. could someone contact me to tell me why use of your product shouldn’t continue past 2 hours? [I probably won’t heed the reason unless it’s a life or death warning: I love this product that much!] 2. Please feel free to post my letter in your testimonials, if you ever decide to post such customer comments.
Alpha brainwaves are resonating just below beta brainwaves at the frequency range of 8Hz to 12Hz on an EEG. Beta brainwaves are the normal, waking life, active, rational thinking and problem solving brainwaves that are dominant in most people throughout the day. Alpha brainwaves begin to show up when relaxation occurs. Often times the simple act of closing your eyes can product spurts of alpha waves. Taking a few deep breaths or consciously relaxing will do the same. When alpha waves become dominant, the body and mind are usually comfortably relaxed.

In 1984 medical researcher Dr. Gene W. Brockopp published a paper making several conclusions of audio and visual entrainment (AVE). Such conclusions were that hemispheric synchronization caused by AVE is related to increased intellectual functioning, practiced use of AVE overtime leads to a cumulative effect, and AVE may result in the recovery of early childhood experiences.
The phenomena of brainwave entrainment was first described in the scientific literature in 1973 by Gerald Oster in results published in an article in Scientific American entitled, “Auditory Beats in the Brain”. He showed that a specific brainwave could be induced when a person heard two separate, but closely related, sound frequencies, one in each ear. He discovered that when the frequencies heard by each ear differed by about 10 hertz, the brainwave pattern of the person hearing the sound would synchronize to the difference between the two frequencies. For example, if the person heard a 410 hertz sound in one ear and a 400 hertz sound in the other ear, their brainwaves would stabilize at the difference between the two, or 10 hertz. This technique is called binaural beats, and it is a fundamental principle of brainwave entrainment methods.
You may already have a good feel for where each of the different brainwave states takes you, and know intuitively what will work for you the best on a day-to-day basis with your meditation practice. If you are a little fuzzy about the differences between the brainwave states, however, and would like to have a really clear, visceral sense of what each state does for you and how they resonate with you physically, mentally, and emotionally, one way you can find out is to listen to Harmonic … [Read more...]
it says the following: “Running a delta sleep session throughout the night is not recommended as it can interrupt the normal sleep cycle”. I’ve been looping pure delta isochronic tones for about 5 days now, and have had quality sleep. Should I continue looping delta or should I let the videos play out without looping them? Will it will harm my health to do loop delta while I sleep?

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Recently developed entrainment software has been designed to correct specific imbalances in hemispheric activity associated with undesirable mind-states. For example, people suffering with depression often have more activity in the right hemisphere, and specially designed brainwave music decreases this activity while increasing activity in the left hemisphere, reducing depression.
I have been listening to relaxing music on YouTube while writing (I write for a court TV show) YouTube recommended Binaural Beats; I thought the sound was annoying at first, and almost moved on from it, but when I felt a tickle in my brain (It sounds funny but I’m being honest!) I decided to research about Binaural Beats and came across this amazing, informative website, it’s only been a few minutes of listening to Binaural Beats and I’m hooked! thank you Zenlama.com

The only downside is that there is a limited choice available – only 8 tracks in fact (but they are so powerful you are likely to forgive them). The tracks range from the performance enhancing Deep Concentration, the amazing Crystal Clear Mind (which I count as one of my secret weapons when I want to get something done quickly to meet a deadline). And the awesomely mind expanding God Consciousness.
In simplest form, they are an audio technology which are used for (safe) brainwave entrainment. Our subconscious mind operates, throughout the day and night, in various brainwave state frequencies, measured in cycles per second (Hz) These frequencies range from the slowest (Delta) frequencies experienced in deep, dreamless sleep and in deep meditation where your conscious-awareness is fully detached, to the fastest (Gamma) frequencies associated to stimulating flow states, high-level thinking and information processing. There are actually 5 known brainwave state frequencies each having their own set of unique characteristics:

Over the past few years, brainwave entrainment products have made a great rise in popularity, reaching more people than ever before and peaking their interest with the many benefits ensured. We now have a continually expanding pool of options to choose from, as well as more information and scientific research on the subject than in the past.  Brainwave Entrainment audios, and the products being made with this technology are literally changing the game in the personal development field, and have become one of the largest catalysts in our recent evolution as a human race.  In fact, these audios may be one of the main contributing factors in unlocking the potential to tap into the untouched 98% of our brains that we are currently not using.
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Theta brainwaves are next highest in frequency above delta and are especially important for many people using brainwave entrainment and meditation because theta waves are at a threshold, forming a link between wakefulness and the subconscious mind. Theta waves bridge between our awake self and the creative and insightful understandings from below our conscious awareness, and while they are not common in awake adults, they are normative for children under 13 years old. 
My final point is that brainwave entrainment is worth trying, and instead of being stopped by the fear of its improper use, you better reap its numerous benefits by following the safety guidelines I went through in this article. So, it all comes down to the question – are you ready to take your ability to create what you want for yourself in life to the next level?
If you find that you are really heavily into overwhelm, you can just turn the volume down and meditate with the biofield amplitudefrom your iPod, CD player, PC, or Mac transmitting a very healing biofield technology that allows you to dig deeper into meditative states without putting your nervous system on edge. Now you are pushing and purifying your nervous system without bludgeoning it.
Sensorimotor rhythm (SMR) is one final type of brainwave that has been studied. SMR, also known as low beta, is a type of brainwave, which occurs in the sensorimotor cortex, in the 12 to 15 hertz range when that area of the sensorimotor cortex is idle and immobile. The purpose of SMR brainwaves is not well understood, but some neurofeedback practitioners report training to increase SMR brainwaves can be beneficial for people with autism, epilepsy, ADD, insomnia, drug addiction, and as an aide to better manage stress.
Depression: Currently there is no substantial evidence to support the idea that brainwave entrainment treats depression in adults. Some evidence goes as far as to suggest that the wrong entrainment protocol (e.g. slow wave stimulation) may actually increase certain measures of depression. Stimulation of delta and/or theta, will likely worsen the condition and alpha is unlikely to have an effect.
When you embark on this accelerated journey, more than ever you need to understand that brainwave entrainment is a powerful tool, but that your actions, thoughts, and how you use this powerful tool are still strong determining factors in how much you get out of the technology. It’s not just an easy way out. You are going to have to go through a growth and transformational process.
I first became aware of brainwave meditation programs  and brain waves when researching alternative methods for treating the bipolar disorder I had been unsuccessfully living with my entire adult life. I eventually learned a method of releasing difficult emotions on the spot, which I then practiced extensively, and consequently found it easier and even desirable to meditate for fairly lengthy periods of time. Though I took up meditation as a serious daily practice and experienced many undeniable benefits, I nonetheless intermittently experienced life-debilitating bouts of mania and severe depression, often resulting in chaotic mixed states and an inability to maintain daily social functions. During these times, it became nearly impossible to sit in meditation.
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Now next point to make here is that many of the other promised benefits of brainwave entrainment stem from this basic foundation.  For example, it has been said that listening to brainwave entrainment resets the brain’s sodium/potassium ratio, greatly decreasing mental fatigue, and improving the transporting of positive neurochemicals between brain cells.  This promise rests on the fact that it has been shown that this occurs while one is in the theta state. Therefore, the answer would be that yes, because these audios do lead one’s brain into the theta state, then it follows that they would promote the resetting of the brain’s sodium potassium ratio.
I wouldn’t personally recommend listening to delta wave frequencies for depression, so I’m not sure who advised you to do that? People with depression usually have a higher ratio of theta and delta wave activity, so I would normally recommend listening to high alpha wave and low beta wave frequencies, to help balance things. I have some 10Hz alpha tracks for serotonin release, which you can try for free on my YouTube channel here: https://www.youtube.com/watch?v=3NSUcuzpRcY&list=PLveg0IEcZWN6T86nhmSrdwG2kMQtcLRou. I also recommend you give these SMR (low beta wave) tracks a try: https://www.youtube.com/watch?v=HGTvBbrEwZQ&list=PLveg0IEcZWN7yaMaKr8F-eWHALk2_zGqY. I hope that helps.
Isochronic tones have only been proven to have an effect while you are listening to them, that’s why you won’t find me claiming anywhere that there are potentially positive long-term effects. Once the tones stop, your brainwaves are no longer being stimulated by the sound and so they stop being in sync with the tone frequency. For you to think you are still feeling the effects after all this time and from such a short time listening to them, I think it may be linked to anxiety. I know that some people who are new to this type of thing can build up a strong feeling of anxiety, after worrying about the potential effects brought on by fear of the unknown. I suspect the problem may be psychological with you worrying about the potential effects and keep repeating the experience from memory in your head. When you keep going over the same thing in your head like that and worrying about it, it’s easy to then spot other potential side-effects like how your nostrils and body temp is feeling, then making links back to that experience and labelling that as the reason. I think the best way to overcome this is to realise that the side-effects you are mentioning are completely unrelated, so there is nothing to worry about. These tracks are literally listened to for millions of hours a month on YouTube across loads of channels. If the effects lasted for a long time people would just listen for 5 minutes and come back in a couple of weeks. But people keep coming back to listen because that’s the only way to feel the benefit and effects…while you are listening to them. If you are unable to stop thinking and worrying about this on our own, I recommend that you speak to your doctor about it or a specialist in dealing with anxiety issues. I hope that helps.
***NOTE: (Last one) Please do research on which brainwaves do what before just trying out the first track you find! Also read descriptions of what frequencies are being used in the track, so you know what you are training your brain to! (Example: You struggle with OCD and have some anxiety. You see a track titled “Clear, Focused Thinking” and you try it out w/o reading the description. You either do not experience anything or you end up with worse anxiety/headache than before. If you knew before starting, that your problems were caused by too much Beta wave activity in your brain and the track was all low Beta ramping up to high Beta – you would not listen to it!)

A popular opinion in the brainwave entrainment community is that listening to isochronic tones without music produces a much stronger effect.  However, in the study by Doherty, Cormac. “A comparison of alpha brainwave entrainment, with and without musical accompaniment” (2014),  it was concluded that brainwave entrainment was equally effective for isochronic tones, both with and without music.
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